Author

Alessio Mengoni

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#software testing Open access Sep 2026

From code to natural language: MErlin – a multi-omics toolkit for bacterial epigenomics delivered as Claude agent skill

MErlin (Methylation-driven Expression & Regulation Linkage in Interacting Nuclear-domains), a multi-omics toolkit comprising seventeen composable modules, from basecalled modBAM files to ranked gene-level evidence and a self-contained HTML report is presented.

Iacopo Passeri, Solène Pety, Michele Giovannini et al. · bioRxiv · 0 citations

Open access Aug 2026

Comparative transcriptomic analysis reveals distinct responses of beneficial bacterial endophytes to wild and cultivated rice root exudates

Wild and cultivated rice accessions differ in their interaction with beneficial bacterial endophytes at the transcriptional level, indicating that microbiome-associated traits altered during domestication could be exploited for sustainable rice breeding.

Francesca A. Vaccaro, Maria Laura Amenta, Iacopo Passeri et al. · Plant Cell Reports · 0 citations