Cross-docking and redocking reveal distinct determinants of success in physics-based and AI-driven binding pose prediction in protein–ligand complexes
Protein–ligand pose prediction is central to structure-based drug discovery, yet the relative performance of physics-based and AI-driven methods under realistic cross-docking conditions remains insufficiently characterized. Here, we compare physics-based docking methods (AutoDock4, AutoDock Vina, and DOCK 6) with data-...