Author

Adib Miraki Feriz

3 papers indexed here

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Open access Oct 2026

Fine-Grained and Reliable Cell Classification from Pathology Images

Molecular assays such as spatial transcriptomics facilitate fine-grained identification of cell types for analyzing tumor microenvironments. However, they are expensive to acquire in routine clinical practice compared to hematoxylin and eosin (H&E) images. With molecular guidance, such images can distinguish cell linea...

Sevda Öğüt, Arpit Merchant, Amirhossein Vahidi et al. · bioRxiv · 0 citations

Open access Oct 2026

Transcriptomic and phenotypic characterization of Alzheimer’s disease risk genes in neurons and astrocytes highlights shared and cell type specific cellular mechanisms

Genome-wide association studies have identified nearly 100 genetic loci that affect Alzheimer’s disease risk. However, there is still a major challenge in linking genetic associations to genes and understanding their downstream cellular mechanisms of action. To address this gap, we performed single-cell transcriptomics...

Caia Dominicus, Diego Peretti, Geraldine Rodschinka et al. · bioRxiv · 0 citations

Open access Aug 2026

Multi-scale modeling of human tissues from spatial transcriptomics with TERRA

Spatial transcriptomics maps gene expression at cellular resolution, revealing how cells organize into multicellular niches. Yet computational analyses remain dataset-specific, without a transferable representation of tissue organization that generalizes across datasets, tasks and tissues or predicts how tissues behave...

Sebastian Birk, M. V. Sanian, Amirhossein Vahidi et al. · bioRxiv · 4 citations · ⚡1