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Alberto Magi

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#artificial intelligence Preprint Oct 2026

What DNA Foundation Models Learn Beyond Sequence Composition

Do genomic foundation models (FMs) provide predictive information beyond simple sequence composition? We evaluate frozen representations from five DNA FMs against normalized k-mer frequencies across 57 genomic classification datasets and two exploratory gene-expression regression tasks. Simple k-mer features remain com...

Vincenzo Yuto Civale, Andrew D. Bagdanov, Alberto Magi · 0 citations

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