Fine-tuned code models often behave as domain specialists and can degrade sharply under distribution shift: in our clone-detection setting, a model trained on same-language clones drops 71\% F1 on cross-language clones, while multi-task training falls to 0.151 F1 on unseen AI-generated clones. Our companion study shows that post-hoc model merging can address this fragmentation, achieving 93\% of multi-task performance without training data while generalizing 4$\times$ better to unseen clone types. However, no practical tool exists that lets SE researchers diagnose checkpoint compatibility, merge specialists, validate results on SE benchmarks, and export models for deployment. We present \textbf{MergeSE}, an open-source CLI and web tool for training-free model merging of HuggingFace encoder checkpoints. While motivated by OOD generalization in clone detection, MergeSE supports SE classification workflows more broadly through a built-in registry of nine task types, including vulnerability detection, defect prediction, and code-smell detection. MergeSE provides five operations: \textit{tasks}, \textit{inspect}, \textit{merge}, \textit{evaluate}, and \textit{export}. It supports five merging algorithms, including TIES, DARE-TIES, Wudi, PCB, and averaging; detects cross-task classification-head mismatches; produces seedable deterministic outputs; and includes bundled benchmark samples for smoke-test reproduction. A full merge of two 124M-parameter checkpoints completes in under 5 seconds on CPU. End-to-end validation confirms that MergeSE-produced checkpoints match reference implementations and recover cross-domain performance from domain-specific specialists. The tool is available online at https://mergese.usask.ca, and the development repository is at https://github.com/srlabUsask/MergeSE.
Palash Ranjan Roy, Banani Roy, Kevin A. Schneider et al.· 1 citation
The growing diversity of code clone types, from syntactic copies to cross-language semantic clones to AI-generated duplicates, has created a fragmentation crisis in clone detection. Current deep learning detectors are domain specialists that degrade significantly outside their training distribution, with F1 drops exceeding 70% across domains. Deploying multiple specialized models is impractical, yet training a single cross-domain detector requires simultaneous access to all training data. To address this, we investigate model merging, a family of post-hoc techniques that operate solely on trained checkpoints. We evaluate parameter merging with five task-vector methods, architecture merging via greedy layer stitching, and cross-tokenizer alignment across four code models, three benchmarks, and twelve configurations. Same-base TIES merging creates effective cross-domain detectors, validated across two model families and three random seeds, reaching 0.865 combined F1 on UniXcoder, 93% of multi-task performance without any training data at the merging step. WUDI achieves the highest in-distribution combined F1 at 0.899, but TIES generalizes better to unseen AI-generated clones, making it our recommended method. Cross-base merging yields only marginal and high-variance gains across all five methods, indicating that task vector compatibility through a shared pre-trained base is the binding factor for effective merging. Merged detectors also outperform zero-shot code LLMs on GPTCloneBench at lower inference cost and generalize up to 4x better than multi-task training to unseen AI-generated clones, suggesting a trade-off between in-domain performance and OOD robustness. This work provides one of the first systematic empirical studies of model merging for software engineering and a practical recipe for building cross-domain clone detectors.
Palash Ranjan Roy, Banani Roy, Kevin A. Schneider et al.· 1 citation
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