Open access
Aug 2026
Protocol for haplotype-resolved structural variant detection via long-read sequencing using cuteHap
A protocol for using cuteHap, a robust framework for haplotype-aware SV detection through phased alignment reads generated by diverse long-read sequencing platforms, and procedures for single-nucleotide variant (SNV) calling, read phasing, SV calling, and genotyping are described.
Shu-Qi Cao, Chuanmin Wu, Yue-Jin He et al.
· STAR Protocols · 0 citations