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Author

Diya Mathai

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Open access Aug 2026

ProtPen Combines Sequence- and Structure-based Approaches to Facilitate Protein Function Predictions on a Proteome-wide Scale.

ProtPen is an open-source pipeline that facilitates protein function prediction by combining eggNOG-mapper for sequence-based annotation with Foldseek for rapid structural similarity searches using AlphaFold-predicted protein structures to facilitate the systemwide annotation of proteins of unknown function from proteo...

Diya Mathai, S. Schulze · 0 citations
Open access Jul 2026

ProtPen combines sequence- and structure-based approaches to facilitate protein function predictions on a proteome-wide scale

ProtPen is an open-source pipeline that facilitates protein function prediction by combining eggNOG-mapper for sequence-based annotation with Foldseek for rapid structural similarity searches using AlphaFold-predicted protein structures and is readily extensible to incorporate additional protein function prediction too...

Diya Mathai, S. Schulze · 0 citations

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