Author

Edwin A. Solares

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Open access Oct 2026

HapSolo2: GPU-accelerated optimization for removing secondary haplotigs from diploid genome assemblies

Background Secondary haplotigs retained in a primary assembly inflate genome size and duplicate gene content, and their removal remains a necessary curation step for heterozygous diploid genomes. HapSolo (Solares et al. 2021) treats this step as an optimization problem: it searches three pairwise alignment thresholds (...

Juan Yin, Mansi Agrawal, Prashansa Goel et al. · bioRxiv · 0 citations

Open access Oct 2026

Thille, a chromosome-level type B avocado genome, and the structural and allelic variation at candidate flowering-type loci

Avocado (Persea americana Mill.) is heterodichogamous: each flower opens first as female and then as male, and cultivars fall into two complementary flowering types, A and B, determined by the transcription factor SDMYB, whose dominant allele confers type A. Published avocado genomes come from type A cultivars or from...

Edwin A. Solares, Edward Tang, Brianna Sanchez et al. · bioRxiv · 0 citations

Open access Sep 2026

Cell-cycle genes in the mussel Mytilus galloprovincialis are cued by aerial heat stress in a fluctuating tidal environment.

Mytilus galloprovincialis is a sessile, facultative anaerobic mussel inhabiting intertidal zones, where it experiences daily fluctuations in oxygen, temperature, and food availability. These environmental fluctuations require coordinated shifts in metabolism and cellular processes such as the cell cycle. As growth in m...

Helen C. Hong, Edwin A. Solares, Michael M. Abdelsayed et al. · Journal of Comparative Physi... · 0 citations