Falak Sher Khan

PlantOmicsGWAS: An end-to-end, reproducible framework for plant genome-wide association and genomic prediction using linear and pan-genome references

PlantOmicsGWAS is an open-source Python framework for reproducible plant genome-wide association analysis and genomic prediction that integrates reference indexing, FASTQ quality control, alignment, variant calling, VCF normalization, PLINK conversion, linkage disequilibrium analysis, population-structure estimation, a...