Author

G. Dumbović

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Open access Sep 2026

The periphery of nuclear speckles defines a spatially and temporally regulated compartment of long-lived intron-retained RNAs that resolves during mitosis

RNA localization adds a fundamental layer to gene expression by determining when and where translation-ready mRNAs become available, yet how this timing is coordinated with nuclear architecture and cell-cycle progression remains unclear. Here we identify a subnuclear RNA niche at the nuclear speckle periphery that coup...

Josep Biayna, A. Baranovskii, Anusha Chaudhuri et al. · Nature Cell Biology · 0 citations

Open access Aug 2026

PARNET: A CLIP-SEQ-BASED FOUNDATION MODEL FOR RNA SEQUENCE REPRESENTATION LEARNING

Parnet is a multi-task foundation model trained end-to-end on 223 eCLIP-seq experiments spanning 150 RBPs to predict base-resolution RBP binding profiles directly from RNA sequence, and establishes the RBP interactome as a compact, functionally sufficient, and interpretable basis for foundation model pretraining in RNA...

Lambert Moyon, Andreina Tirabassi, Artem Baranowskii et al. · bioRxiv · 0 citations