Author

Gerard Villarroya-Pique

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Preprint Sep 2026

Automatic Generation of Expert-Level Neuron Segmentation Masks from Fluorescence Microscopy Images for Non-Invasive Deep Learning Analysis of Phase-Contrast Images

Background&Objective Accurate segmentation of neurons in microscopy images of neuronal cultures is crucial for research on neurodegenerative diseases and neurotoxicity. Manual annotation of such images is time-consuming, subjective, and inconsistent across experts. Deep learning (DL) models offer an effective alternati...

Gerard Villarroya-Piqué, Víctor M. González, E. Serrano-Pertierra et al. · 0 citations

Preprint Aug 2026

NeuroAdaptTrainer: A Fiji/ImageJ Plugin for YOLO-Based Neuron Segmentation, InteractiveCorrection and Transfer Learning

Neuron counting and segmentation in microscopy images of neuronal cultures is a routine and time-consuming task in neuroscience research, traditionally performed through manual inspection or semi-automatic tools. We present NeuroAdaptTrainer, an open-source Fiji/ImageJ plugin that integrates a YOLO instance-segmentatio...

Daniela Eraso-Casas, Gerard Villarroya-Pique, E. Serrano-Pertierra et al. · 0 citations