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I. Dueñas-Espín

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Open access Oct 2026

BioGraphBench-PPI enables audit-first evaluation of negative-sampling contracts and structural baselines in protein interaction networks

Biomedical graph-learning results are difficult to compare when source versions, identifier rules, data splits, structural features, and sampled-nonedge contracts are incompletely documented. We developed BioGraphBench-PPI as an audit-first benchmark for protein-protein interaction (PPI) link prediction usin...

A. Cabrera-Andrade, Jorge Robalino-Díaz, I. Dueñas-Espín et al. · 0 citations

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