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James A. D. Docherty

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Open access Aug 2026

Defining the ESKAPE pathogen prophage repertoire with PHORAGER

PHORAGER (Prophage Hunting, vOtu Retrieval, Annotation and Genomic ExploRation), a scalable Nextflow pipeline for the standardised identification and quality assessment of prophages from bacterial genomes, validated using 30,824 publicly available ESKAPE pathogen genomes.

Xena Dyball, Alise J. Ponsero, James A. D. Docherty et al. · 0 citations