Author

Jia-Jie Cai

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Open access Sep 2026

A token-pruning framework enables efficient representation of the human genome for RNA modification analysis

Experimental results show that ATSFormer consistently outperforms existing state-of-the-art methods while achieving substantial computational savings and structural analysis using AlphaFold3 supports the biological relevance of the motifs identified by ATSFormer.

Wen-Jia Gao, Jun-Lei Yu, Jun-Ru Jin et al. · Bioinformatics · 0 citations

Jul 2026

PeptideSGCL: Structure-Enhanced Graph-Transformer Encoding and Dual-Level Contrastive Learning for Peptide Property Prediction.

A multimodal dual-contrastive learning framework for peptide property prediction is proposed, which improves both the structural encoder and the contrastive learning strategy to enhance the quality of joint sequence-structure representations.

Jiajie Cai, Shuwen Xiong, Yuntao Yang et al. · ACS Synthetic Biology · 0 citations