Open access
Oct 2026
Meta2Data: Automated data processing for large scale microbiome data re-analysis
Meta2Data is a modular, largely automated pipeline implemented in Python and Bash for the retrieval, standardization, and processing of public microbiome sequencing data. It retrieves metadata from major public repositories, including INSDC and CNCB, using user-provided keywords or BioProject/BioSample identifiers. Ret...
Jia-Xuan Li, Anne Duplouy, Lin-Yang Sun
· bioRxiv · 0 citations