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Author

Jing Wan

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#graph neural networks Sep 2026

Retrieval-Augmented Residual Graph Neural Network for Protein-Protein Interaction Site Prediction.

RGLLA-PPIS, a novel multimodal prediction model that integrates retrieval-augmented learning and residual GNNs for PPIS identification, outperforms several state-of-the-art baselines in both accuracy and robustness and demonstrates its potential to guide real-world protein engineering tasks.

Jia Mi, Ya-Wen Liu, Chong Chu et al. · 0 citations
Aug 2026

Investigating cross-organism prediction of prokaryotic essential proteins using unsupervised language model and ensemble strategy.

This study proposes DeepPEP, a large language model-based framework designed to reliably transfer essential protein annotations between distantly related organisms and suggests that DeepPEP is a powerful strategy for prokaryotic essential protein prediction.

Ying Du, Zhikang Liu, Jing Wan · 0 citations

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