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Le-Ming Shi

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Open access Aug 2026

Plasma titration provides a physical ruler for cross-platform proteomics

Plasma proteomics is expanding across platforms and cohorts, and integrating these data for AI demands comparability at the protein level, not merely concordant associations1,2. Affinity and MS platforms use distinct probes (antibodies, aptamers, or peptides) and signal readouts, yielding contradictory cross-platform r...

Yaqing Liu, Haiyan Wang, Yutong Zhang et al. · 0 citations
Open access Aug 2026

Benchmarking RNA-seq with the Quartet and MAQC reference materials to establish best practices for accurate alternative splicing analysis

It is shown that high data quality and depth improved the accuracy of splice junction detection, as well as isoform- and event-level quantification and differential analysis, contributing to effective srRNA-seq application in RNA splicing research.

Duo Wang, Jia-Xin Zhao, Qing-Wang Chen et al. · 0 citations
Preprint Aug 2026

TransNRank: Towards Accurate Neoantigen Ranking with Transformer

A novel deep learning framework based on Transformer, coined as TransNRank, that streamlines the prediction pipeline but also sets a new state-of-the-art for neoantigen discovery, with broad implications for accurate immuno-oncology.

Zhiyin An, Yue-Nan Hou, Shumeng Duan et al. · 0 citations

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