Author

M. Arıkan

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Sep 2026

MetaproDB: A Flexible and Reproducible Framework for Biome-Informed Protein Sequence Database Construction for Metaproteomics

Metaproteomic analyses commonly rely on protein sequence databases, yet database construction remains one of the most variable steps in metaproteomic workflows. Here, I present MetaproDB, a flexible and reproducible framework for biome-informed protein-sequence-database construction in metaproteomics. MetaproDB integ...

M. Arıkan · Journal of Proteome Research · 0 citations

Review Open access Sep 2026

Integrating multi-omics technologies to decipher microbiome functions

This perspective highlights recent advances in multi-omics microbiome research, outlines key obstacles in data integration and metadata harmonization, and proposes a collaborative roadmap for scalable, FAIR-compliant multi-omics investigations and potentially disruptive Artificial Intelligence advances.

T. Van Den Bossche, Eunice Lazau, Velma T. E. Aho et al. · Nature Communications · 0 citations