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Mansi Agrawal

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Open access Oct 2026

HapSolo2: GPU-accelerated optimization for removing secondary haplotigs from diploid genome assemblies

Background Secondary haplotigs retained in a primary assembly inflate genome size and duplicate gene content, and their removal remains a necessary curation step for heterozygous diploid genomes. HapSolo (Solares et al. 2021) treats this step as an optimization problem: it searches three pairwise alignment thresholds (...

Juan Yin, Mansi Agrawal, Prashansa Goel et al. · 0 citations

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