Author

Martin Beracochea

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Open access Sep 2026

MAP: a comprehensive pipeline for mobilome annotation and cargo gene characterisation in prokaryotic (meta)genomic assemblies

Summary Mobile genetic elements (MGEs) drive horizontal gene transfer in prokaryotes, disseminating antimicrobial resistance genes (ARGs), virulence factors (VFs) and biosynthetic gene clusters (BGCs). Given their importance, there is a pressing need for a single, open source tool that annotates the MGE repertoire toge...

Alejandra Escobar-Zepeda, Martin Beracochea, Tatiana A. Gurbich et al. · bioRxiv · 0 citations

Review Open access Aug 2026

FAIRyMAGs - a series of FAIR Galaxy workflows for the generation of metagenome assembled genomes

FAIRyMAGs provides an accessible, extensible, and reproducible framework for genome-resolved metagenomics, reducing technical barriers and enabling methodological innovation through community-driven development within the adaptable Galaxy ecosystem.

P. Zierep, Mina Hojat Ansari, P. Bühler et al. · bioRxiv · 0 citations