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Author

Moshe Alon

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Open access Sep 2026

Conserved inhibitory mechanisms of root-associated bacteria towards Arabidopsis thaliana and Chlamydomonas reinhardtii

Soil bacteria colonize plants without causing visible disease, yet many suppress host growth. The prevalence and evolutionary reach of this cryptic inhibition are unknown, because phenotyping hundreds of isolates in plants is prohibitively slow. Here we use the unicellular algae Chlamydomonas reinhardtii as a scalable...

Tzila Vikinyanski, Elad Meilin, Andrei Makhon et al. · 0 citations
#small language model Open access Sep 2026

Fast and accurate taxonomic domain assignment of short metagenomic reads using BBERT

Testing on a large cohort of soil metagenomes, it is found that BBERT identifies bacterial sequence syntax without relying on reference databases, enabling accurate assignment of taxonomic domain, coding potential, and reading frame directly from reads as short as 100 bp.

Dmitry Alekhin, Moshe Alon, Tomer Sidi et al. · 0 citations

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