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Niloofar Yousefi

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#machine learning Preprint Sep 2026

One pool, many targets: a conservation layer and what archival data can identify

Pairwise guide--transcript scores do not enforce conservation of a finite guide-loaded RISC pool when they are interpreted independently as occupancies. We formulate a differentiable scalar equilibrium layer: one conservation equation with a unique positive root and exact implicit gradients. It yields a redistribution...

Zahra Khodagholi, Niloofar Yousefi · 0 citations
#artificial intelligence Preprint Sep 2026

Representable but Unlearned: Encoding Rank and the Interaction-Prediction Floor

Input encodings can restrict which measured contrasts a predictor can jointly reproduce, even when no single contrast is forced to vanish. We compute the attainable contrast space from an encoder's equivalence classes and a fixed contrast design, without labels, loss, or a fitted model; projecting the recorded contrast...

Zahra Khodagholi, Niloofar Yousefi · 0 citations
#artificial intelligence Preprint Sep 2026

Agreement Overstates Evidence: Error Dependence in LLM Judge Consensus

Consensus among LLM judges is often taken as strong evidence that a decision is correct. This assumes that judges make their errors independently. In practice, LLM judges are often trained and evaluated in similar ways, so they can make the same mistakes. We study how this dependency affects the reliability of consensu...

Elias Hossain, Niloofar Yousefi, Ser-Nam Lim · 1 citation
#artificial intelligence Preprint Sep 2026

A Decision-Support Audit Protocol for Supervision Drift in Proxy-Labeled Credit-Risk Prediction

Credit-risk models are trained on proxy labels and deployed under temporal and segment change, yet no single transfer metric separates base-rate shift, probability-scale shift, and feature-label relationship change. We contribute a design-science artifact: a locked, multi-signal audit protocol for supervision drift in...

Mehrdad Shoeibi, Muhammad Shabanpour, W. Karwowski et al. · 0 citations
Jul 2026

BRIDGE: Bottleneck-Aware Regulator-Set Inference and Diagnosis for Cooperative Gene Regulatory Recovery

Bottleneck-Aware Regulator-Set Inference and Diagnosis (BRIDGE), a framework for complete regulator-set recovery, and Targeted Recovery Attribution for Cooperative Evaluation (TRACE), a diagnostic suite that attributes failures to retrieval, set-level scoring, decoding, and evaluation bottlenecks are introduced.

Maryam Rahimimovassagh, Clayton Barham, Ivan Garibay et al. · 2 citations
Preprint Jul 2026

Pre-Registered External Evaluation Yields a Consistent Partial-Replication Category across Three Transcriptomic Foundation Models

A pre-registered, final-test-once evaluation framework that locks the outcome rule, seeds, and target-gene-grouped splits before any test data are seen, and scores each frozen representation against a strong expression baseline, a matched-capacity Gaussian control, and a within-split row-identity (shuffle) control.

Mehrdad Shoeibi, Niloofar Yousefi · 0 citations

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