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Author

Orkid Coskuner-Weber

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Open access Sep 2026

The Logos Framework: Temporally Relative Order and Residual Disorder in Finite Observations

Order and disorder are described through entropy, randomness, uncertainty, and noise, yet these concepts do not explain how observers classify patterns under finite, resolution dependent observations. We propose the Logos framework as a conceptual and formal account of temporally relative order and residual disorder. A...

Orkid Coskuner-Weber, S. Alpsoy, V. Uversky et al. · 0 citations
Jul 2026

BioMatics 1.0: A Wasserstein Distance Approach for Next-Generation Multiple Sequence Alignment.

Benchmark evaluations across curated datasets spanning conserved domains, structural motifs, and heterogeneous families demonstrate that BioMatics 1.0 outperforms widely used tools in column score (CS) accuracy and achieves competitive or comparable sum-of-pairs score (SPS) results.

Orkid Coskuner-Weber, Yusuf Emre Ari, Yildiray Efe Berberoglu et al. · 2 citations

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