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Open access Aug 2026

Clinical validation of an optimised metagenomic nanopore sequencing method for detecting viral respiratory pathogens.

BACKGROUND Clinical metagenomics (CMg) offers high-throughput respiratory pathogen detection with a wider range than targeted, probe-dependent diagnostics. Sequencing cost and the challenges of high host biomass are barriers to the use of CMg in high-throughput respiratory pathogen detection in non-invasive samples suc...

N. Sanderson, K. Dingle, K. Hopkins et al. · 0 citations
Open access Sep 2026

Integrated surveillance in Kilifi reveals continued SARS-CoV-2 circulation and immune escape of emerging JN.1 sublineages post-pandemic

This study demonstrates that SARS-CoV-2 continues to circulate in coastal Kenya causing predominantly mild upper respiratory illness while evolution enabling immune escape, and emphasizes the importance of integrated genomic and immunological surveillance to track emerging variants, evaluate population-level protection...

Gloria Konyino, B. Kutima, Sharon Owuor et al. · 0 citations

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