Small VCF databases, one per cohort. Variants, genotypes, and samples live in either chDB (embedded ClickHouse) or DuckDB; gene and ClinVar annotations live in a sibling DuckDB file. A bundled Model Context Protocol server exposes a small set of tools so a language-model client can query the cohort in natural language...
Paulo A. F. Nuin· Zenodo (CERN European Organi...· 0 citations
Small VCF databases, one per cohort. Variants, genotypes, and samples live in either chDB (embedded ClickHouse) or DuckDB; gene and ClinVar annotations live in a sibling DuckDB file. A bundled Model Context Protocol server exposes a small set of tools so a language-model client can query the cohort in natural language...
Paulo A. F. Nuin· Zenodo (CERN European Organi...· 0 citations
Small VCF databases, one per cohort. Variants, genotypes, and samples live in either chDB (embedded ClickHouse) or DuckDB; gene and ClinVar annotations live in a sibling DuckDB file. A bundled Model Context Protocol server exposes a small set of tools so a language-model client can query the cohort in natural language...
Paulo A. F. Nuin· Zenodo (CERN European Organi...· 0 citations
Small VCF databases, one per cohort. Variants, genotypes, and samples live in either chDB (embedded ClickHouse) or DuckDB; gene and ClinVar annotations live in a sibling DuckDB file. A bundled Model Context Protocol server exposes a small set of tools so a language-model client can query the cohort in natural language...
Paulo A. F. Nuin· Zenodo (CERN European Organi...· 0 citations
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