Symmetric sparse tensors arise naturally from multi-relational data, such as co-purchasing patterns, co-authorship networks, and temporal interaction data, and Tucker decomposition of such data extracts low-rank latent structure. The primary computational bottleneck is the Symmetric Sparse Tensor Times Same Matrix Chai...
Yongseok Soh, Shruti Shivakumar, Jia-Jia Li et al.· Proceedings of the Internati...· 0 citations
Protein homology search is foundational to bioinformatics: it supports annotation transfer, structure/function inference, and evolutionary analysis over rapidly expanding sequence repositories (e.g., UniProtKB). Profile hidden Markov models (pHMMs), as implemented in HMMER, remain the most widely trusted approach becau...
Swethasree Bhattaram, D. Bhowmik, Ramakrishnan Kannan· Proceedings of the 32nd ACM...· 0 citations
CAHS (Context-Aware Homology Search), a lightweight query-time adapter for pHMM search that incorporates learned and biologically motivated signals without changing HMMER's downstream search pipeline or its calibrated E-value reporting, illustrates a practical AI-for-science design pattern.
Swethasree Bhattaram, D. Bhowmik, Ramakrishnan Kannan· Proceedings of the 32nd ACM...· 0 citations
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