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Sameer M. Padhye

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Open access Aug 2026

BOLDconnectR: An R package for streamlined retrieval, transformation, and analysis of DNA barcode data on BOLD

DNA barcode data are essential infrastructure for biodiversity science as they enable scalable species identification and integrative analyses that link sequences to specimens, taxonomy, and geography. The Barcode of Life Data System (BOLD) is a centralized bioinformatics workbench that supports the full barcode data l...

Sameer M. Padhye, Liliana Ballesteros-Mejia, Josh Agda et al. · 0 citations
Open access Aug 2026

The Metabarcoding Analysis Pipeline (MAP): Simple, accurate, and flexible metabarcoding

MAP is developed, the Metabarcoding Analysis Pipeline, which is a sequence-to-answer workflow supporting the analysis of amplicons from highly multiplexed and replicated study designs and generates biodiversity estimates that correspond closely to a ground-truth dataset of single-specimen DNA barcode data.

S. Prosser, Nicholas W. Bard, K. Thompson et al. · 0 citations

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