Author

Shinya Oki

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Open access Oct 2026

PIC-RNA-seq for Region-Specific Transcriptomic Analysis of Chicken Limb Bud Progenitors

Region-specific RNA sequencing is a powerful approach for investigating tissue differentiation and dynamic changes in gene expression during embryonic development. The chicken embryo has long served as an important model system in developmental biology. However, the limited availability of tissue-specific reporter line...

Seung June Kwon, Zhao-Nan Zou, Seiko Watanabe et al. · Bio-protocol · 0 citations

Open access Sep 2026

A transcription factor regulatory atlas for activity inference and perturbation prediction

TFActProfiler is presented, a TF–mRNA resource and computational framework that learns signed, quantitative TF–mRNA regulatory coefficients by integrating heterogeneous prior evidence (ChIP-based, motif-based, and curated TF–mRNA annotations) with large-scale bulk and single-cell RNA-seq atlases.

Hikaru Sugimoto, Koki Tsuyuzaki, Zhao-Nan Zou et al. · Nucleic Acids Research · 0 citations