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T. Marschall

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Open access Dec 2024

gaftools: a toolkit for analyzing and manipulating pangenome alignments

Gaftools enables users to index and sort alignments, with graph ordering serving as a necessary step for the sorting process, and allows users to view subsets of alignments and perform realignment using the wavefront alignment algorithm, among other useful features.

Samarendra Pani, Fawaz Dabbaghie, T. Marschall et al. · 8 citations
Open access Jul 2026

Pangenome-based human genome analysis improves trait association and genomic prediction

A graph-based method for associating sequence variation with traits using short-read genome sequencing data, and shows that it captures complex forms of genetic variation missed by other methods, suggest that integration of pangenomic methods into human genetic studies will improve trait association and genomic predict...

Shuangjia Lu, Wen-Wei Liao, Marianne K. DeGorter et al. · 0 citations

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