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Umair Seemab

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Open access Sep 2026

CoTRA: a comprehensive R/Shiny framework for transparent bulk and single-cell RNA-seq analysis

Bulk RNA-seq and single-cell RNA-seq (scRNA-seq) are widely used to investigate gene-expression changes, but downstream analysis often requires multiple statistical, visualization, and reporting tools, creating fragmented workflows that are difficult to configure and reproduce. We developed CoTRA (Comprehensive Toolbox...

Umair Seemab, Katri Vainionpaa, Ziaurrehman Tanoli et al. · 0 citations
Open access Aug 2026

CoTRA: an integrated R/Shiny framework for transparent bulk and single-cell RNA-seq analysis

Bulk and single-cell RNA sequencing (scRNA-seq) have become essential for investigating disease mechanisms and identifying diagnostic biomarkers. However, the growing volume of transcriptomic data remains difficult to reuse efficiently for many researchers. Downstream analysis often requires multiple statistical, visua...

Umair Seemab, Katri Vainionpaa, Ziaurrehman Tanoli et al. · 0 citations

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