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Valentina Boeva

2 papers indexed here

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#machine learning Preprint Oct 2026

GeneICL: A Tabular Foundation Model for Bulk Transcriptomics

Gene expression is widely measured in biomedicine, yet clinical outcome prediction remains challenging due to high dimensionality, strong feature correlations, and limited labeled data. Large self-supervised transcriptomic foundation models often fail to outperform simple supervised baselines. Tabular foundation models...

Michael A. Bohl, Alexander Theus, David Wissel et al. · 0 citations
Open access Jul 2026

CDState Resolves Malignant Cell Heterogeneity from Bulk Tumor RNA-Sequencing Data.

CDState, an unsupervised deconvolution method based on nonnegative matrix factorization with a sum-to-one constraint and a cosine-similarity-based optimization, which infers malignant cell states using bulk RNA-seq data, is demonstrated to be utility for characterization of malignant cell states from bulk RNA-seq data.

Agnieszka Kraft, Josephine Yates, Florian Barkmann et al. · 0 citations

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