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Xiao Yu Cindy Zhang

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#artificial intelligence Preprint Sep 2026

OntologyBench: Can Dense Retrieval Satisfy Structured Biomedical Constraints?

It is indicated that the evaluated embedding and reranking configurations do not reliably recover the compatibility encoded by the selected ontology relations and phenotype combinations and motivate retrieval systems that better integrate learned representations with structured biomedical knowledge.

Xiao Yu Cindy Zhang, W. Wasserman, Jian Zhu · 0 citations