Author

Y. Tian

2 papers indexed here

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#machine learning Preprint Oct 2026

OctMole: Multiscale 3D Molecular Generation with Hierarchical Spatial Flows

Generating accurate 3D molecules requires jointly determining a variable number of atoms, their identities, and geometry across spatial scales: global shape emerges coarsely, whereas chemical bonds demand fine local precision. Existing atom-based diffusion and flow models operate largely at a single scale, while dense...

Yu Jin, Y. Tian, Qi-Wei Ye et al. · 0 citations

Open access Sep 2026

Transcription factors read a second regulatory code in chromatin

A widespread, chromatin-dependent mode of sequence recognition is uncovered: many TFs recognize motifs on nucleosomal DNA that are distinct from their canonical naked-DNA binding sites, revealing that nucleosome architecture encodes a second gene regulatory code in chromatin.

Xin-Xiao Zheng, Y. Tian, Jin-Yu Li et al. · bioRxiv · 0 citations