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Yanjun Li

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Jul 2026

Learning Mechanistic Reasoning for Chemical Reactions with Large Language Models.

A novel, large-scale reasoning dataset of reaction mechanisms, and the FukuyamaBench, a difficult benchmark derived from Fukuyama's Advanced Organic Reaction Mechanism book, to rigorously evaluate model performance on hierarchical mechanism reasoning, demonstrate that mechanism-aware training substantially enhances chemical reasoning in language models.

Xingyu Dang, Haocheng Tang, Junmei Wang et al. · 0 citations
Open access Jun 2026

Pep2Mol: 3D Molecule Generation Targeting Protein-Protein Interfaces with Diffusion Models

P Pep2Mol is introduced, a diffusion-based generative model for 3D molecule design that targets orthosteric PPI sites by explicitly incorporating binding peptides or proteins as structural guidance, moving beyond conventional pocket-conditioned generation.

Rongting Yue, Zekun Yang, G. Seabra et al. · 0 citations