Open access
Aug 2026
Benchmarking Docking Protocols for GPCR Allosteric Modulators
GaMD ensemble docking improved early AM enrichment across all four targets under at least one program, and the Boltz-2 deep-learning program showed minimal sensitivity to GaMD templates and underperformed conventional docking, suggesting its affinity predictions complement rather than replace physics- and empirical-based docking approaches for GPCR AM screening.
T.D. Thompson, Yinglong Miao
· bioRxiv · 0 citations