Imaging-based spatial transcriptomics enables molecule-resolved profiling of gene expression and tissue organization in situ. However, segmentation errors, transcript spillover and three-dimensional cell overlap can introduce misassigned transcripts into cell-level expression profiles, compromising biological interpret...
OceanMind is introduced, a multi-agent AI system that directly couples large language models (LLMs) with comprehensive time-dependent 3D ocean states for swift and effective diagnosis and improves general ReAct agents with the same registered tool pool on a benchmark of 240 computational-workflow queries.
Fan Zhang, Wei-Cong Cheng, Yu-Heng Chen et al.· 0 citations
This study introduces CellART, a unified framework designed to extract single-cell information across diverse high-resolution spatial transcriptomics platforms, including VisiumHD, Xenium, MERFISH, and Stereo-seq, and highlights its ability to fully leverage high-resolution ST data.
Yu-Heng Chen, Yu-Yao Liu, Zhi-Wei Wang et al.· bioRxiv· 1 citation
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