Author

Yuan Liu

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#artificial intelligence Preprint Sep 2026

Subcellularly Resolved Single-Cell Embedding Learning with Transcriptomic data, Protein Structure and Localization Information

This work proposes a multimodal framework for learning subcellularly resolved cell embeddings by jointly leveraging RNA expression profiles, protein sequence representations, and protein structural information, and is the first framework that produces subcellularly resolved cell embeddings by jointly incorporating tran...

Zhen Zhou, Jia-Chen Li, Yuan Liu et al. · 0 citations

Open access Jul 2026

Benchmarking protein sequence and structure search methods for remote homology detection.

This benchmark establishes a standardized framework for evaluating protein similarity search methods, providing a practical resource for method selection and a foundation for the development of next-generation approaches capable of addressing diverse homology search challenges.

Yuan Liu, Ying-Quan Zhou, Yan Huang et al. · Genome Biology · 1 citation