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Author

Yun Liu

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Review Oct 2026

Benchmarking biological knowledge-graph priors against single-cell foundation models for Perturb-seq prediction.

Perturb-seq prediction increasingly relies on either biological graph priors or single-cell foundation models, but their relative value is difficult to interpret when architectures, split definitions and graph sources vary simultaneously. We benchmarked STRING functional associations and Gene Ontology co-annotation aga...

Jie Ni, Xin-Ting Zhang, Ming-Yang Li et al. · 0 citations
Aug 2026

BAMPDA: a Matrix Refactoring Framework with Heterogeneous Inference for Potential PTM-disease Association Identification.

BAMPDA is developed, a matrix refactoring framework with heterogeneous inference designed to enhance the inference of PTM-disease associations and rigorous 5-fold cross-validation demonstrates that BAM PDA significantly outperforms five recent baseline methods.

Xin-Ting Zhang, Jie Ni, Zihao Song et al. · 0 citations

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