AI Networking Cookbook: Practical recipes for AI-assisted network automation and development
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This work introduces CryoAtlas, a rigorously curated dataset and unified benchmark for density-guided atomic model building of protein chains, and constructs a 618-target benchmark with a shared evaluation protocol that jointly assesses structural accuracy, model-to-map fit, and stereochemical validity.
Experiments show that AP-REASONER outperforms baseline subsamplers on structure-sensitive downstream tasks and enables controllable recovery of alternative protein conformations, highlighting the value of modeling MSA subsampling as a controllable optimization problem, where factor-graph reasoning offers an effective a...
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