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2,173 papers

#machine learning Preprint Open access Aug 2026

Quantifying Memorization and Privacy Risks in Genomic Language Models

Genomic language models (GLMs) have emerged as powerful tools for learning representations of DNA sequences, enabling advances in variant prediction, regulatory element identification, and cross-task transfer learning. However, as these models are increasingly trained or fine-tuned on sensitive genomic cohorts, they risk memorizing specific sequences from their training data, raising serious concerns around privacy, data leakage, and regulatory compliance. Despite growing awareness of memorization risks in general-purpose language models, little systematic evaluation exists for these risks in the genomic domain, where data exhibit unique properties such as a fixed nucleotide alphabet, strong biological structure, and individual identifiability. We present a comprehensive, multi-vector privacy evaluation framework designed to quantify memorization risks in GLMs. Our approach integrates three complementary risk assessment methodologies: perplexity-based detection, canary sequence extraction, and membership inference. These are combined into a unified evaluation pipeline that produces a worst-case memorization risk score. To enable controlled evaluation, we plant canary sequences at varying repetition rates into both synthetic and real genomic datasets, allowing precise quantification of how repetition and training dynamics influence memorization. We evaluate our framework across multiple GLM architectures, examining the relationship between sequence repetition, model capacity, and memorization risk. Our results establish that GLMs exhibit measurable memorization and that the degree of memorization varies across architectures and training regimes. These findings reveal that no single attack vector captures the full scope of memorization risk, underscoring the need for multi-vector privacy auditing as a standard practice for genomic AI systems.

Alexander Nemecek, Wenbiao Li, Xiaoqian Jiang et al. · 0 citations

TiMi: Empower Time Series Transformers with Multimodal Mixture of Experts

This paper introduces a Multimodal Mixture-of-Experts (MMoE) module as a lightweight plug-in to empower Transformer-based time series models for multimodal forecasting, eliminating the need for explicit representation-level alignment.

Jiafeng Lin, Yuxuan Wang, Huakun Luo et al. · 1 citation
#machine learning Preprint Feb 2026

Community Concealment from Graph Neural Networks

Feature-Community-guided DICE (FCom-DICE), a perturbation strategy built on DICE that rewires a set of structurally influential edges and adjusts node features to reduce the distinctiveness exploited by GNN message passing is introduced.

Dalyapraz Manatova, P. Moriano, L. J. Camp · 0 citations
#machine learning Preprint Jan 2026

Parametric and Generative Forecasts of EPEX Day-Ahead Energy Market Curves

Two methodologies for modelling aggregated supply and demand curves in the EPEX SPOT Day-Ahead market are proposed, emphasizing generative models as a way to recover distributional variability and a low-dimensional parametric representation that yields deterministic point forecasts.

Julian Gutierrez, Redouane Silvente · 0 citations

Cluster Aggregated GAN (CAG): A Cluster-Based Hybrid Model for Appliance Pattern Generation

The proposed Cluster Aggregated GAN framework is established, a hybrid generative approach that routes each appliance to a specialized branch based on its behavioral characteristics that consistently outperforms baseline methods across metrics measuring realism, diversity, and training stability.

Zikun Guo, A. Adedigba, Rammohan Mallipeddi · 1 citation

Row-stochastic matrices can provably outperform doubly stochastic matrices in decentralized learning

A weighted Hilbert-space framework is developed and sufficient conditions under which the row-stochastic design converges faster even with a smaller spectral gap are derived, by using a Rayleigh-quotient and Loewner-order eigenvalue comparison.

Bing Liu, Boao Kong, Limin Lu et al. · 0 citations

A Weak Penalty Neural ODE for Learning Chaotic Dynamics from Noisy Time Series

This work empirically verify that the weak formulation, with a proper choice of test function and integration domain, effectively filters noisy data and explains why a weak form loss function is analogous to fitting a model to filtered data and provides a practical way to parameterize the weak form.

Xuyang Li, J. Harlim, R. Maulik · 1 citation · ⚡1
#machine learning Preprint Oct 2025

One Pipeline, Many Transformers: Pattern-Specific Imputation Specialists for Tabular Missing Data

A single pre-training pipeline that builds transformer-based imputation specialists through three components: an entry-wise featurization that recasts imputation as supervised prediction over row--column context, a synthetic data generator with pluggable missingness modules, and prior-data fitting on millions of synthetic tables.

Jacob Feitelberg, Dwaipayan Saha, Kyuseong Choi et al. · 2 citations · ⚡1

Asynchronous Message Passing for Addressing Oversquashing in Graph Neural Networks

This work proposes an efficient, model-agnostic framework that asynchronously updates node features across layers, unlike standard synchronous message passing, and shows theoretically that the framework's sensitivity bound decays more slowly with depth than synchronous message passing.

Kushal Bose, Swagatam Das · 0 citations

Estimating Parameter Fields in Multi-Physics PDEs from Scarce Measurements

Across various physical and biomedical problems, where direct parameter measurements are prohibitively expensive or unattainable, Neptune significantly outperforms existing methods, achieving robust parameter estimation from as few as 45 measurements and reducing parameter estimation errors by up to two orders of magnitude.

Xuyang Li, Mahdi Masmoudi, R. Gharbi et al. · 1 citation
#machine learning Preprint Open access Aug 2026

HeteRo-Select: Informativeness as the Participation Driver in Heterogeneous Federated Learning

Federated learning systems typically allocate gradient compression by link speed. This is sensible when bandwidth and data informativeness align. However, under non-IID data, these signals often decorrelate or invert. A bandwidth-driven allocator then risks compressing the most informative gradients hardest. We propose HeteRo-Select, a framework that replaces bandwidth with a per-client informativeness score as the primary driver of compression. The score jointly governs three decisions per round: client selection, compression ratio, and server aggregation weight, with bandwidth retained only as a hard ceiling. Score-proportional selection provably reduces the effective heterogeneity of the chosen subset; score-proportional compression provably lowers aggregate top-$k$ error at fixed traffic. Under the exact FedCG simulation protocol, HeteRo-Select delivers a $1.78\times$ speedup and an $18.2\%$ reduction in traffic on CIFAR-10. The same configuration, unchanged, scales from a $7{,}850$-parameter logistic regression to an $11.27$M-parameter ResNet-18, hitting the accuracy target on three of four benchmarks. When bandwidth and informativeness are deliberately anti-correlated, the method still achieves the target accuracy with less traffic than the normal-bandwidth run.

Md. Akmol Masud, Md Abrar Jahin, Mahmud Hasan · 0 citations

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MIT News · Artificial Intelligence Aug 27, 2026

Looking beyond natural sequences

A new machine-learning framework aims to improve the success rate of computational protein design while moving away from results that reproduce sequences found in nature.

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