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Core, Resident, and Transient Members of the Trout Gut Microbiome: Dietary, Environmental, Stress and Pathogen/Antibiotic Modulation

Sep 2026 · Veterinary Sciences · Vol 13 · 0 citations · 77 references
Medicine

TL;DR

It is shown that while trout harbour a stable core of gut microbes, their composition shifts with diet, stress, and antibiotics, and understanding these diet–stress–microbiome interactions is key to designing better functional feeds and probiotics.

Abstract

Simple Summary Gut bacteria are essential for trout health, growth, and immunity, and are therefore critical to sustainable farming. This review shows that while trout harbour a stable core of gut microbes, their composition shifts with diet, stress, and antibiotics. Diet can rapidly and beneficially alter the microbiota, but chronic stress can cause persistent damage, reducing bacterial diversity and weakening disease resistance. Understanding these diet–stress–microbiome interactions is key to designing better functional feeds and probiotics. This knowledge will help detect gut imbalances early and improve trout welfare in commercial aquaculture.

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