Macromolecular self-assembly underlies a plethora of biological processes and provides a versatile route for fabricating functional soft materials. The kinetics of self-assembly in solution are inherently stochastic and are fundamentally governed by the interplay of translational and rotational diffusion of the constituent macromolecules. While most computational studies model macromolecules as patchy spherical colloids, thereby neglecting the influence of polymer architecture and internal conformational dynamics, the role of these factors in macromolecular self-assembly kinetics remains poorly understood. Here, we investigate the self-assembly of two patchy macromolecules with different architectures, namely linear chains and star polymers with four and seven arms. The hydrodynamic radii of the macromolecules are chosen to be nearly identical, thereby matching their translational diffusion coefficients and thus isolating the influence of rotational diffusion on the self-assembly process. The binding probability of the patchy macromolecules is found to depend strongly on their internal architecture. Furthermore, reactive path density analysis reveals that self-assembly pathways are influenced by the rotational diffusion coefficient of the individual macromolecules. Overall, this study establishes a bridge between the equilibrium dynamics of macromolecules and their self-assembly kinetics, highlighting the importance of polymer internal architecture in the process of self-assembly.
We investigate the structure and dynamics of a polymer in a fluid containing mobile spherical colloidal crowders of radius R. We compare and contrast the behavior with Langevin dynamics (LD) and lattice Boltzmann molecular dynamics (LBMD), the latter incorporating long-range hydrodynamic interactions. Both the colloid...
Setarehalsadat Changizrezaei, C. Denniston· Journal of Chemical Physics· 1 citation
Controlling the nonequilibrium dynamics in synthetic systems is an important challenge in supramolecular chemistry. Biological morphogenesis exploits nonequilibrium reaction–diffusion processes to organise differentiated cell networks and functions in space. In contrast, artificial assemblies are mostly formed under th...
Tetrahedral geometry is a ubiquitous structural motif in molecular, crystalline, and colloidal materials, where directional interactions and anisotropic particle shape can generate open frameworks, complex superlattices, and hierarchical assemblies. This thesis investigates how tetrahedral interactions and tetrahedral...
Most coarse-grained models of the nanoscale self-assembly process employ rigid building blocks that do not exhibit shape adaptation, limiting our understanding of the role of elasticity in altering self-assembly pathways. We study how bending rigidity of nanoscale building blocks affects their self-assembly using micro...
Fanbo Sun, Lucas Snyder, Vikram Jadhao· Soft Matter· 0 citations
The self-assembly of colloidal particles enables the creation of structured materials with programmable functionalities; however, controlling interaction specificity and aggregate morphology in a reversible and scalable manner remains a major challenge. Here, we investigate the selective depletion-induced self-assembly...
D. Sahu, Jude Ann Vishnu, Lisa Shafroth et al.· 0 citations
The transport of neutral organic molecules through nanoscale pores is central to a wide range of processes, yet the molecular factors governing their mobility remain difficult to predict. Here, we use all-atom molecular dynamics simulations under a nonpolarizable force field to examine the diffusion of 1,4-dioxane, p...