Skip to content

Self-Explainable Multi-Label Graph Neural Network for Correlated Evidence Attribution

Yingqi Feng Yufei Tang Min Shi Xingquan Zhu
Aug 2026
Artificial Intelligence Machine Learning

Abstract

Multi-label graph learning intends to capture the intrinsic complexity of real-world applications, where one sample is often related to multiple groups or consists of multiple objects. To date, a handful of multi-label graph learning methods exist, but none of them integrate training-time interpretation capability. While post-hoc graph explainers have been developed, they do not explicitly model label-dependent evidence sharing in multi-label graph learners, especially when label pairs are weakly or negatively associated. As a result, post-hoc approaches may miss how evidence should be shared or separated across different labels. This paper advances a new end-to-end self-explainable multi-label graph neural network (SEMGNN), which aims to simultaneously classify multi-labeled nodes and identify edges significantly contributing to each target node w.r.t. predicted labels. Different from post-hoc methods, SEMGNN jointly learns a predictor and a sparse edge-mask explainer within a unified framework and training objective. Label-label correlations are used to improve multi-label node classification and enhance individual label explanations, so that different labels of a node can be supported by distinct yet coherent structural and/or correlated evidence. Experiments and comparisons on synthetic and real-world multi-label networks, in social networking, entertainment, and life sciences, show that SEMGNN achieves competitive or improved predictive performance while providing more faithful and compact label-conditioned explanations.

View source

Similar papers

#machine learning Open access Oct 2020

Physics-Informed and Hybrid Machine Learning in Additive Manufacturing: Application to Fused Filament Fabrication

This article investigates several physics-informed and hybrid machine learning strategies that incorporate physics knowledge in experimental data-driven deep-learning models for predicting the bond quality and porosity of fused filament fabrication (FFF) parts. Three types of strategies are explored to incorporate physics constraints and multi-physics FFF simulation results into a deep neural network (DNN), thus ensuring consistency with physical laws: (1) incorporate physics constraints within the loss function of the DNN, (2) use physics model outputs as additional inputs to the DNN model, and (3) pre-train a DNN model with physics model input-output and then update it with experimental data. These strategies help to enforce a physically consistent relationship between bond quality and tensile strength, thus making porosity predictions physically meaningful. Eight different combinations of the above strategies are investigated. The results show how the combination of multiple strategies produces accurate machine learning models even with limited experimental data.

B. Kapusuzoglu, S. Mahadevan · 79 citations · ⚡2

Spikformer V2: Join the High Accuracy Club on ImageNet with an SNN Ticket

This work introduces a pioneering exploration of Self-Supervised Learning (SSL) within the SNN, and proposes a novel Spiking Self-Attention (SSA) and Spiking Transformer (Spikformer) that achieves 80+% accuracy on ImageNet.

Zhaokun Zhou, Kaiwei Che, Wei Fang et al. · 69 citations · ⚡10
#machine learning Open access May 2021

Information fusion and machine learning for sensitivity analysis using physics knowledge and experimental data

This paper considers global sensitivity analysis (GSA) for situations where both a physics-based model and experimental observations are available, and investigates physics-informed machine learning strategies to effectively combine the two sources of information in order to maximize the accuracy of the sensitivity estimate.

B. Kapusuzoglu, S. Mahadevan · 45 citations
#machine learning Conference Open access Feb 2023

EquiPocket: an E(3)-Equivariant Geometric Graph Neural Network for Ligand Binding Site Prediction

EquiPocket is proposed, an E(3)-equivariant Graph Neural Network for binding site prediction, which comprises three modules: the first one to extract local geometric information for each surface atom, the second one to model both the chemical and spatial structure of protein and the last one to capture the geometry of the surface via equivariant message passing over the surface atoms.

Yang Zhang, Wenbing Huang, Zhewei Wei et al. · 43 citations · ⚡4
#artificial intelligence Review Dec 2025

Professional Software Developers Don't Vibe, They Control: AI Agent Use for Coding in 2025

Investigating how experienced developers use agents in building software, including their motivations, strategies, task suitability, and sentiments finds that while experienced developers value agents as a productivity boost, they retain their agency in software design and implementation out of insistence on fundamental software quality attributes.

Ruanqianqian Huang, Avery Reyna, Sorin Lerner et al. · 19 citations · ⚡1
#artificial intelligence Open access Oct 2022

Adaptive surrogate modeling for high-dimensional spatio-temporal output

An adaptive surrogate modeling method for problems with very high-dimensional spatio-temporal outputs is developed that combines exploration and exploitation to improve the surrogate model accuracy with the fewest possible runs of the expensive physics-based model.

B. Kapusuzoglu, S. Mahadevan, Shunsaku Matsumoto et al. · 17 citations

Related blog posts