Jul 2026· Journal of the American Chemical Society· Vol 148, pp. 30920-30929· 0 citations· 50 references
Medicine
TL;DR
Investigating the first microsecond of peptide condensation through temperature jump infrared spectroscopy and molecular dynamics simulations reveals that hydrogen bonding could enable hydrophobic disordered proteins to adopt preorganized conformations in response to environmental stimuli and serve as a key factor in mediating the assembly kinetics in complex cellular environments.
Abstract
Biomolecular condensation is a key process for cells to maintain their normal physiological activities. However, the process of phase transition remains mysterious, especially for the initial moments of condensation. Herein, we investigated the first microsecond of peptide condensation through temperature jump infrared spectroscopy and molecular dynamics simulations. These techniques overcome the limited spatiotemporal resolution of traditional approaches, allowing us to capture the molecular events and kinetic information on the initial moment for phase transition. The results reveal that structural transitions and early assembly of intrinsically disordered proteins occur on ultrafast time scales. Unexpectedly, backbone hydrogen bonding emerges as the overlooked key mediator to stabilize the local structure for the ultrafast condensation of hydrophobic polypeptides compared to hydrophobicity. By locking local structures, hydrogen bonds help to form more stable interaction interfaces. These findings indicate that hydrogen bonding could enable hydrophobic disordered proteins to adopt preorganized conformations in response to environmental stimuli and serve as a key factor in mediating the assembly kinetics in complex cellular environments.
The discovery of biomolecular condensates, driven by liquid–liquid phase separation of intrinsically disordered proteins has significant impacts on both fundamental and applied science and engineering. Although most studies on biomolecular condensates focus on intrinsically disordered structures, research on the role o...
Debdatta Das, Jenny N Nguyen, Navneet Sahoo et al.· Small· 0 citations
Self-assembly, the spontaneous organization of molecular components into ordered structures without external intervention, offers a powerful route to complex nanomaterials. Yet the molecular pathways that govern hierarchical assembly, particularly under non-equilibrium conditions, often remain poorly understood. Here w...
S. Krishnaswamy, Alexey V. Kuevda, M. Stuart et al.· Nanoscale· 0 citations
The formation of microcompartments is a form of self-assembly that governs the transition from chaotic mixtures of molecules to complex systems with functional states. Despite recent advances in systems chemistry, how microcompartments favor the formation of their constituents and become functional remains largely unex...
Tanguy Rieu, F. Esteve, F. Mihoubi et al.· Journal of the American Chem...· 0 citations
An overview of solid-state NMR approaches that are readily applicable and potential methodological developments to investigate protein condensates and coacervates as well as to study protein phase separation and phase transitions are discussed.
Seamoon Deb, Erick J Dufourc, B. Habenstein et al.· Biophysical Chemistry· 0 citations
Using coarse-grained molecular dynamics (CG-MD), this work captures the de novo formation of 4F nanodiscs with DMPC and reveals a multistep assembly pathway involving nucleation, fusion, and ellipse-to-disc maturation, validating the ability of CG-MD to resolve nanodisc assembly mechanisms.
Bikash R. Sahoo, B. Krishnarjuna, Thirupathi Ravula et al.· Journal of Colloid and Inter...· 0 citations
The formation of fibrous architectures via peptide self-assembly underpins numerous biological functions and biomaterial applications; however, the thermodynamic origins of multistep assembly pathways remain elusive. Here, we map the complete free-energy landscape governing the liquid-liquid phase separation (LLPS)-med...
Yufan Yang, Haoning Gong, Peng Zhou et al.· Journal of Physical Chemistr...· 0 citations
We use cookies to run the site and, with your consent, for analytics and to show ads.
See our Cookie Policy.