Integrative transcriptomic, spatial and functional-genomic analysis identifies a UFMylation-related vascular-stromal program and prioritizes WWTR1 in glioblastoma
Findings define an ER-stress/mesenchymal-weighted, UFMylation-related vascular-stromal transcriptional association and nominate WWTR1 for experimental testing.
Glioblastoma (GBM) remains a highly aggressive malignancy, and the contribution of ferroptosis-related genes to disease susceptibility remains incompletely understood. A genetically anchored, multistage framework was applied to prioritize ferroptosis-related genes associated with GBM. Among 483 genes curated from FerrD...
Zhi-Gang Liao, Ming-Ming Xian, Fan-Meng Zeng et al.· Journal of Visualized Experi...· 0 citations
Glioblastoma (GBM) is the most aggressive primary brain malignancy, with a median survival of approximately 15 months despite current standard-of-care treatment. N6-methyladenosine (m6A) RNA modification regulates gene expression, but its relationship with miRNA-mediated regulation, metabolism, and prognosis in GBM rem...
Md. Sohel Rana, Mst Morium Parvin, M. Sarker et al.· Biochimica et Biophysica Act...· 0 citations
MZT1 is a proliferation-associated marker that integrates clinical risk, transcriptional programs, cellular heterogeneity, and predictive modeling in LUAD, providing a potential framework for biomarker development and risk stratification.
Dahlak Daniel Solomon, Hui-Ru Lin, Yung-Kuo Lee et al.· Cancer Genomics & Proteomics· 0 citations
This study prioritizes TPT1 as a candidate molecular marker associated with the bulk-transcriptomic sarcopenia phenotype and network and gene set variation analyses associated lower TPT1 expression with inflammatory, oxidative-stress, cell-death, and stress-adaptive pathways.
Shijie Dong, Min Wang, Chen Liang et al.· Frontiers in Cell and Develo...· 1 citation
TSPAN32 is nominated as the primary SCFA-responsive effector gene in intestinal epithelial cells, coordinating epigenetic remodeling and immunometabolic reprogramming and support TSPAN32 as a predicted network-stabilizing node rather than merely a differentially expressed transcript.
Zahra Masood, Iqra Sarwar, Ayesha Sanam et al.· Frontiers in Bioinformatics· 0 citations
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