2026· ITM Web of Conferences· 0 citations· 7 references
TL;DR
This review systematically summarizes the latest developments in heterogeneous graph neural networks, protein language models, and generative artificial intelligence, pointing out the problems currently being addressed in research such as data sparsity and cold start as well as the manifestations of general machine learning challenges.
Abstract
Drug-target interaction (DTI) prediction is an efficient pre-screening method that uses algorithmic models to assess the binding potential of drug molecules to protein targets. Current research is accelerating towards the integration of heterogeneous graph neural networks, protein language models, and generative artificial intelligence. This review systematically summarizes the latest developments in these technologies, pointing out the problems currently being addressed in research such as data sparsity and cold start, as well as the manifestations of general machine learning challenges such as recommendation systems and noise learning in the biomedical field; Interpret representative models such as Dual Heterogeneous Graph Transformer for Drug-Target Interaction (DHGT-DTI) and Graph Positional encoding and Sequence features for Drug-Target Interaction (GPS-DTI). The combination of dual perspective learning, equivariant graph convolution, and attention mechanism enhances the understanding and reasoning ability of these models in complex biological networks. The generative artificial intelligence diffusion model has opened up a path for developing new drugs through structured and data enhanced approaches. Research has shown that important issues related to computational performance, interpretability, and data compatibility still need to be addressed in existing models. Building a high-performance, multifunctional pre trained model for large-scale biomolecules should be a key direction for development.
A systematic reference for future algorithm design, mechanism exploration, and real-world drug discovery applications for AI-driven DTI prediction methodologies, covering binding theories, task formulations, data representation, model design, translational applications, and unresolved challenges.
Jia-Xuan Hu, Lianlian Wu, Song He et al.· Journal of Chemical Informat...· 0 citations
Current studies remain constrained by data sparsity, negative-sample bias, insufficient model interpretability and limited prospective validation, so future work should strengthen standardized data integration, mechanism-constrained modeling and joint dose-timing optimization to improve interpretability, generalizabili...
Haoyang Su· Applied and Computational En...· 0 citations
A DTI prediction method based on the global self-attentive pooled graph neural network and protein pretraining model, called T-pGNN4DTI, which uses a global self-attention pooled graph neural network to learn more meaningful features of the drug molecule.
By integrating disease-specific context into molecular generation, DrugGen-2 advances AI-assisted drug discovery, offering a powerful tool for de novo design and drug repurposing that accounts for the complex interplay between diseases and molecular targets.
Ali Motahharynia, Mohammadreza Ghaffarzadeh-Esfahani, Mahsa Sheikholeslami et al.· 0 citations
An overview of how artificial intelligence might serve not only as a tool but also as a strategic solution for safe prescribing and tailored pharmacotherapy, hence opening up new avenues for the field of drug safety science is presented.
D. Tripathi, A. Wal, Vivek Kumar Gupta et al.· Current Bioinformatics· 0 citations
Current research problems such as insufficient data quality, limited model generalization ability, insufficient interpretability, and insufficient depth in research targeting specific disease stages are summarized and the future development direction of artificial intelligence technology in intelligent drug discovery f...
Hou-Bo Fang· ITM Web of Conferences· 0 citations
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