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Aug 2026

Molecular Fragment-Based Graph Isomorphism Networks for Interpretable Prediction of Synergistic Drug Combinations.

Results indicate that FragSyn, through the synergistic design of fragment-level representation and cellular context awareness, provides an effective and interpretable new approach to synergistic drug combination prediction.

Li-Feng Shao, Jianqiang Sun, Hong-Zhan Ma et al. · 0 citations
Aug 2026

Multiview feature fusion-based graph representation model for drug-drug interaction prediction

A novel multiview feature fusion-based graph representation model (MFF-GRM) for predicting DDI that integrates drug molecular graphs, SMILES sequences, DDI information networks, and drug biological features to learn drug features more comprehensively.

Mengyuan Jin, Dan Liu, E. Benfenati et al. · 0 citations
Open access Sep 2026

HSSynergy: scale-aware hierarchical attention for interpretable drug synergy prediction

HSSynergy, a hierarchical substructure-aware deep learning framework for predicting anticancer drug synergy, introduces a Scale-Aware Masked Attention mechanism that enforces precise layer-wise alignment, and utilizes hierarchical grouping with mask constraints to achieves same-scale focusing while shielding against cr...

Yue-Hua Feng, Shu-Cong Zhang, Xiao-Ying Yan et al. · 0 citations
Aug 2026

MKASynergy: an adaptive method for drug synergy prediction via a mixture-of-experts kernel mechanism

MKASynergy, an adaptive drug synergy prediction method based on a mixture-of-experts kernel mechanism, achieves competitive predictive performance and visualization analysis confirms the model’s effectiveness in feature decoupling and helps interpret latent drug synergistic mechanisms.

Cundong Lin, Jiancheng Ni, Ying Yang et al. · 0 citations
Open access Jul 2026

Momentum contrast-enhanced multimodal representation learning for drug synergy prediction

Abstract Motivation Accurate prediction of synergistic drug combinations can accelerate anticancer combination discovery. Existing methods inadequately model higher order drug–drug–cell-line interactions and drug–disease associations and remain sensitive to sparse and noisy multiomics data, limiting generalization to u...

Yunxia Gu, Xindi Huang, Lifen Shi et al. · 0 citations
Open access Aug 2026

Multimodal contrastive learning for integrating molecular representations and cellular phenotypes in drug-target interaction prediction

A two-stage contrastive learning framework integrating drug structures, protein sequences, and Cell Painting morphological profiles into a unified embedding space, which reveals pathway-specific morphological signatures associated with drug targets, providing biologically interpretable insights into drug mechanisms.

Ying-Ju Lai, Tianyuzhou Liang, Po-Yuan Chen et al. · 0 citations

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