Aug 2026· Journal of the American Chemical Society· Vol 148 33, pp.
35807-35813
· 0 citations· 55 references
Medicine
Abstract
Perylenediimide (PDI) and its derivatives are widely studied for their photophysical and photochemical properties, making them promising candidates for photonic materials, organic semiconductors, and molecular qubits. However, the lack of control over their aggregation pathways and charge-transfer coupling severely limits their uses. Here, we report the synthesis of PDI-DNA bioconjugates as a new class of "programmable atom equivalents" (PAEs), in which a single PDI core is covalently linked to two DNA strands. Unlike conventional PAE superlattices formed by slow thermal annealing, the vapor-diffusion crystallization method enables the colloidal crystallization of PDI-DNA conjugates into large single-crystalline superlattices through cooperative DNA hybridization and PDI π-π stacking. The peripheral four sticky ends hybridize into a DNA framework, which serves as a scaffold, organizing the PDI cores into well-defined dimers, rather than disordered aggregates or micelles. The dimeric building units are rigid yet highly dynamic due to the intrinsic flexibility of the linkers, yielding superlattices with programmable PDI packing geometries and adaptiveness upon structural modifications. For most PDI crystals, PDI units stack continuously in one dimension to maximize interactions, which tend to hinder charge separation. Here, DNA not only encodes sequence-specific interactions but also sterically and electrostatically isolates PDI dimers as discrete photonic units into solid-state optically active materials. The structural tunability of the system can be readily adjusted by varying the PDI core or the linker length between the PDI core and the DNA shell. Notably, these superlattices exhibit photoinduced symmetry-breaking charge transfer distinct from that of monomers or micellar aggregates.
This work reports a valence-centric strategy that enables DNA-bonded, protein single crystals with unconventional mechanical properties and establishes a programmable framework for biomolecular crystallization and nanomaterials engineering with atomic precision.
Zhenyu Han, C. Mirkin· Science Advances· 0 citations
DNA-mediated colloidal crystal engineering offers a powerful route for constructing three-dimensional nanoparticle superlattices with programmable structures and properties. However, achieving room-temperature fabrication of DNA-bonded colloidal crystals with long-range order remains challenging because nanoparticle assemblies are often kinetically trapped in metastable states. Here, we present a simplified enthalpy-regulation strategy based on a toehold-exchange mechanism to control interactions between DNA-functionalized gold nanoparticles. By tuning the relative lengths of the forward and reverse toeholds and the concentration of a DNA trigger, nanoparticle aggregation kinetics are precisely regulated, enabling a symmetric binary system to circumvent kinetic trapping and assemble into high-quality BCC superlattices. We further extend this approach to an asymmetric binary system, where selective control of linker valence directs the formation of distinct CsCl and AlB2 superlattices. Owing to its simplicity and adaptability, this strategy provides a versatile platform for integrating diverse DNA circuits with colloidal crystal assembly and engineering programmable phase behaviors.
Yun Wang, Wen-Qiang Hua, D. Ni et al.· Nano letters (Print)· 0 citations
Water-soluble alanine-functionalized perylene diimide derivatives (PDI-Ala) were synthesized by introducing alanine units at the imide positions of the PDI framework. Their photoluminescence properties and supramolecular aggregation behavior were investigated in solvents of varying polarity. Chiral L-PDI-Ala displayed distinct solvent-dependent emission colors and intensities, whereas the achiral PDI-Ala showed negligible emission under the same conditions. Poor solvents such as acetone and ethyl acetate promoted relatively efficient emission with hypsochromically shifted bands, while good solvents such as N, N-dimethylformamide and dimethyl sulfoxide induced bathochromically shifted emission with much lower quantum yields. The results indicate that strong face-to-face π-π stacking in the solid-state leads to aggregation-caused quenching (ACQ), whereas ordered aggregates formed by intermolecular forces such as hydrogen bonds or stacking in solution can recover luminescence. On the basis of the spectroscopic and structural results, a solvent-regulated emission mechanism involving excimer/exciplex formation together with H-type and J-type aggregation is proposed. This work provides useful insight into the aggregation-controlled optical behavior of chiral amino-acid-modified PDI materials and offers guidance for the design of chiroptical and self-assembled luminescent systems.
Di Fan, Fan Qi, Nan Li et al.· Molecules· 0 citations
The controlled fabrication of amorphous materials from small organic molecules and their translation into high-performance functional materials remain long-standing challenges. Here, we introduce a multicomponent assembly strategy to developed amorphous materials from π-conjugated amino acids, offering a versatile platform for high-performance adhesive and optical applications. The incorporation of proline-based building blocks into multicomponent networks bypasses the crystallization-induced self-assembly that otherwise dominates in solution, thereby driving liquid-liquid phase separation-like pathways to yield amorphous aggregates. These aggregates exhibit exceptional thermoreversible adhesion to iron-based substrates, with their densely packed architecture facilitating rarely observed excimer emission of fluorene. Furthermore, enhanced charge-transfer interactions with 1,2,4,5-tetracyanobenzene shift the photoluminescence from indigo to green, increase the quantum yield by orders of magnitude, and transition the emission from short-lived prompt fluorescence to long-lived thermally activated delayed fluorescence. Through supercooling, amorphous glasses with high hardness and optical transparency were successfully fabricated, wherein increasing the number of components enables systematic tuning of surface roughness, wettability, quantum yield, emission wavelength, and excited-state lifetime. This work establishes a novel paradigm for synthesizing amorphous materials within multicomponent high-entropy systems, positioning amino acid and short peptide derivatives as a versatile class of biomolecular building blocks for advanced adhesive and photonic applications.
Rong Wang, Xiao Feng, Peng-Yao Xing· Advances in Materials· 0 citations
Perylene dyes are key building blocks in organic optoelectronics and photocatalysis owing to their highly tunable electronic structure. Here, we investigate the impact of imide substitution with bulky 2,6‐isopropylphenyl (iPr) on the structural and electronic properties of perylene diimide (PDI) monolayers on Ag(111). By combining scanning tunneling microscopy, X‐ray absorption and photoemission spectroscopies, we identify two distinct molecular configurations coexisting within an ordered herringbone arrangement. Core level photoemission spectra of monolayer iPr‐PDI reveal two chemically inequivalent oxygen species, which originate from the sterically driven differences in adsorption height. This structural inequivalence translates into markedly different electronic coupling: molecules lying closer to the surface exhibit partial filling of the lowest unoccupied molecular orbitals due to charge transfer from the substrate, whereas those located further away remain electronically decoupled, as evidenced by spectroscopic data and supported by density functional theory calculations. These findings demonstrate that imide substitution can conveniently be exploited for modulating the interfacial electronic character of PDI molecules within a single‐component self‐assembly, since steric effects can modify molecular packing, adsorption height, and molecule–substrate coupling. Our results highlight that substrate‐mediated charge transfer remains a critical design parameter for optimizing charge dynamics in application‐specific organic sensitized heterostructures.
G. Agnesod, Simone Pistillo, Davide Piva et al.· Advanced Materials Interface...· 0 citations