Bacterial Lipases in Bioremediation: Mechanisms, Applications, and Emerging Molecular Insights

Abstract

Oil pollution remains a persistent global environmental challenge due to the recalcitrance and toxicity of lipid-rich contaminants in terrestrial and aquatic ecosystems. Bacterial lipases (EC 3.1.1.3) play a pivotal role in the initial stages of bioremediation by catalysing the hydrolysis of complex lipids into more bioavailable intermediates, thereby facilitating downstream microbial degradation and mineralisation. This review critically examines the mechanistic basis of lipase-mediated hydrocarbon degradation, with emphasis on enzyme structure–function relationships, catalytic pathways, and regulation under environmentally relevant conditions. In addition to conventional applications in soil and wastewater bioremediation, emerging strategies involving immobilised enzymes, microbial consortia, and waste-derived substrates are evaluated for their effectiveness and scalability. Attention is given to advances in molecular and omics approaches, including metagenomics, transcriptomics, and proteomics, which have expanded the discovery of novel lipases but remain limited in their ability to predict in situ functionality. The review highlights the growing role of protein engineering and artificial intelligence in tailoring lipase properties; however, it also critically assesses current limitations, including insufficient experimental validation and challenges in translating computational predictions to complex environmental systems. Furthermore, integrating multi-omics data into quantitative and predictive frameworks is identified as a key future direction for improving bioremediation efficiency. Despite significant progress, major gaps persist in linking enzyme activity to real-world degradation performance and in developing standardized, scalable approaches. This review therefore provides a comprehensive and critical synthesis of current knowledge while identifying strategic research priorities required to advance bacterial lipases as robust tools for sustainable bioremediation of lipid-based pollutants.