Jul 2026· Siberian journal of oncology· Vol 25, pp. 152-158· 0 citations· 5 references
TL;DR
Wholegenome sequencing identified a new pathogenic variant in the NF1 gene associated with the development of neurofibromatosis type 1, which can be used in medical genetic counseling, as well as in algorithms for molecular genetic diagnostics of patients with suspected neurofibromatosis type 1.
Abstract
Background.
neurofibromatosis type 1 is a common hereditary autosomal dominant disorder caused by pathogenic genetic variants in the NF1 gene located on chromosome 17q11.2. the disease is characterized by high allelic heterogeneity and the absence of clear genotypic correlations, with the exception of large deletions associated with a more severe phenotype. Clinically, neurofibromatosis is characterized by the presence of multiple (>6) "café-au-lait” spots, neurofibromas of any type or plexiform neurofibromas, freckles in the axillary or inguinal areas, hamartomatous Lisch nodules of the iris, optic glioma, and bone dysplasia. therefore, the description of each new genetic variant is essential for expanding the spectrum of known variants and improving molecular diagnostics.
Case Report
. the article describes a clinical and molecular genetic study of a 10-year-old boy. since early childhood, the patient has had multiple “café-au-lait” spots, speech impairment, grade 1 hypotrophy, rickets, sequelae of perinatal CNs damage, myotonic syndrome, and a delay in motor development. Magnetic resonance imaging of the brain revealed signs of focal damage to both hemispheres, the cerebellar vermis, and the left subcortical nuclei, and a glioma of the right optic nerve was detected. Neurofibromatosis type 1 was diagnosed based on clinical criteria. Whole-genome DNA sequencing was performed, followed by bioinformatics analysis and confirmation of the results by direct sanger sequencing. A previously undescribed complex, likely pathogenic variant NM_001042492.3:c.40 60_4068delinsC of the NF1 gene was identified in the heterozygous state. this variant leads to a reading frameshift and premature translation termination after the synthesis of 23 amino acids (p.ser1354Leufs*23). this variant is not present in available population genetic variant databases.
Conclusion.
thus, wholegenome sequencing identified a new pathogenic variant in the NF1 gene associated with the development of neurofibromatosis type 1. the obtained data expand the range of variants for this pathology and can be used in medical genetic counseling, as well as in algorithms for molecular genetic diagnostics of patients with suspected neurofibromatosis type 1.
Neurofibromatosis type 1 (NF1) is a severe monogenic disorder characterized by café-au-lait spots and neoplastic lesions, including plexiform neurofibromas that are treated with targeted therapy using a mitogen-activated protein kinase inhibitor. A sporadic case of NF1 caused by a unique, previously unreported NF1 gene mutation, c.1369_1370insGGGTC(p.H457fs), was identified in a 13-year-old boy. The features of NF1 in the patient included early manifestation of tumor syndrome with simultaneous development of cutaneous neurofibromas, tumors of spinal roots, vagus nerve and plexiform neurofibromas, cognitive and speech impairment, growth retardation, and multiple skeletal abnormalities. At the age of 10, targeted therapy was initiated, resulting in a significant tumor size reduction and thus indicating the effectiveness of this approach in NF1 caused by this pathogenic NF1 variant.
R. Mustafin· Pediatric Hematology/Oncolog...· 0 citations
Neurofibromatosis type 1 is an autosomal dominant disorder caused by loss-of-function mutations in the
NF1
gene, leading to constitutive Ras pathway activation.
NF1
gene mutations exhibit complete penetrance, cause high phenotypic variability, and feature diverse types without established hotspots. This study identified a novel pathogenic variant via whole-exome sequencing in a pediatric case, broadening the spectrum of known
NF1
mutations. We further describe the clinical response to the MEK inhibitor selumetinib, including regression of subcutaneous nodules, with no significant improvement in cutaneous neurofibroma scores was observed.
Neurofibromatosis type 1 (NF1) is a rare autosomal dominant multisystem disorder caused by
NF1
gene variants. Although NF1 shows marked clinical and genetic heterogeneity, large Chinese cohorts integrating clinical features,
NF1
variant spectrum, and external variant contextualization remain limited.
We conducted a cross-sectional study of 847 clinically confirmed Chinese patients with NF1 to characterize demographic features, clinical manifestations, DNB-defined severity, and
NF1
variant spectrum. Whole-exome sequencing was performed in 211 patients. Transcript-level variant distribution was assessed using a 500-bp sliding-window approach and further contextualized using ClinVar-derived
NF1
variant data.
Among 847 patients, the median age was 23 years, 27.5% had a family history of NF1, and more than 90% were younger than 40 years. Café-au-lait macules, neurofibromas, and plexiform neurofibromas were observed in 98.3%, 70.7%, and 20.9% of patients, respectively. Younger age, lower neurofibroma burden, and absence of learning difficulties were associated with DNB-defined mild classification. Among 211 genetically tested patients, pathogenic/likely pathogenic
NF1
variants were identified in 182 patients, 11 carried
NF1
variants of uncertain significance, and 18 had no reportable
NF1
variant. In total, 152 distinct
NF1
variants were identified, including 45 novel sites. Transcript-level analysis showed regional variation in reportable nucleotide-level
NF1
variants, with relatively higher variant density around exons 10–15 and 44–49. Comparison with ClinVar pathogenic/likely pathogenic
NF1
variants showed no significant window-level difference after multiple-testing correction.
This cross-sectional study summarizes the clinical and genetic features of Chinese patients with NF1 and expands the known
NF1
variant spectrum in this population. Transcript-level analysis showed regional variation in reportable
NF1
variants, broadly paralleling the ClinVar pathogenic/likely pathogenic
NF1
variant distribution. These findings provide a basis for future longitudinal studies to validate clinically meaningful genotype–phenotype relationships in NF1.
Ya-Xin Guo, Xin-De Liu, Yi-Qiu Yan et al.· Orphanet Journal of Rare Dis...· 0 citations
Introduction
. The differential diagnosis of hypertrophic cardiomyopathy (HCM) requires the ruling out phenocopies. Noonan syndrome with multiple lentigines (NSML) is a rare genetic disorder with an autosomal dominant inheritance pattern, classified as a RASopathies. In 85% of cases, NSML is caused by mutations in the
PTPN11
gene, which encodes the key enzyme in the RAS pathway, protein tyrosine phosphatase SHP2. The remaining cases are associated with mutations in the
RAF1
and
BRAF
genes. Like other RASopathies, NSML presents with a phenotypic triad of facial dysmorphism, cardiopathy, and growth retardation. Distinctive features of NSML include cutaneous manifestations in the form of lentigines (90%) and a high (up to 80%) incidence of HCM phenocopy.
Brief description
. We described a familial case of NSML caused by the Thr468Met mutation in the
PTPN11
gene. The proband was a 38-year-old woman with a long-term history of HCM. Facial dysmorphism was mild, and multiple lentigines were not associated with the disease. Left ventricular hypertrophy was concentric, with a maximum myocardial thickness of 34,5 mm. The disease course was complicated by presyncope due to ventricular tachycardia episodes. All of the patient’s children inherited NSML, had a typical facial phenotype, lentigo, and a phenocopy of HCM. In addition to HCM phenocopy, the patient’s eldest son and youngest daughter had pulmonary artery stenosis of varying severity.
Discussion
. Diagnosis of NSML in the proband was difficult due to a decrease in the severity of external signs with age and poor awareness among cardiologists of the external syndrome manifestations. This case demonstrates the variability of cardiac pathology within families and the importance of family screening and monitoring of family members for the timely diagnosis of cardiac pathology.
G. Golovina, A. S. Tochenaya, Z. Tatarintseva et al.· Russian Journal of Cardiolog...· 0 citations
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